Serialized Form
-
Package org.jmol.adapter.smarter
-
Class org.jmol.adapter.smarter.Atom extends javajs.util.P3 implements Serializable
-
Serialized Fields
-
altLoc
char altLoc
-
anisoBorU
float[] anisoBorU
-
atomName
java.lang.String atomName
-
atomSerial
int atomSerial
-
atomSetIndex
int atomSetIndex
-
atomSite
int atomSite
-
bfactor
float bfactor
-
bsSymmetry
javajs.util.BS bsSymmetry
-
chainID
int chainID
-
elementNumber
short elementNumber
-
elementSymbol
java.lang.String elementSymbol
-
foccupancy
float foccupancy
-
formalCharge
int formalCharge
-
group3
java.lang.String group3
-
ignoreSymmetry
boolean ignoreSymmetry
-
index
int index
-
insertionCode
char insertionCode
-
isHetero
boolean isHetero
-
partialCharge
float partialCharge
-
radius
float radius
-
sequenceNumber
int sequenceNumber
-
tensors
javajs.util.Lst<java.lang.Object> tensors
-
vib
javajs.util.V3 vib
-
-
-
-
Package org.jmol.applet
-
Class org.jmol.applet.AppletWrapper extends javax.swing.JApplet implements Serializable
-
Serialized Fields
-
bgcolor
java.awt.Color bgcolor
-
clockBaseline
int clockBaseline
-
clockWidth
int clockWidth
-
clockX
int clockX
-
font
java.awt.Font font
-
fontAscent
int fontAscent
-
fontHeight
int fontHeight
-
fontMetrics
java.awt.FontMetrics fontMetrics
-
fontSize
int fontSize
-
isSigned
boolean isSigned
-
mediaTracker
java.awt.MediaTracker mediaTracker
-
needToCompleteInitialization
boolean needToCompleteInitialization
-
preloadClassIndex
int preloadClassIndex
-
preloadClassNames
java.lang.String[] preloadClassNames
-
preloadImage
java.awt.Image preloadImage
-
preloadImageName
java.lang.String preloadImageName
-
preloadImagePainted
boolean preloadImagePainted
-
preloadImageReadyForDisplay
boolean preloadImageReadyForDisplay
-
preloadTextMessage
java.lang.String preloadTextMessage
-
preloadThreadCount
int preloadThreadCount
-
previousClassName
java.lang.String previousClassName
-
startTime
long startTime
-
textColor
java.awt.Color textColor
-
wrappedApplet
WrappedApplet wrappedApplet
-
-
-
Class org.jmol.applet.JmolApplet extends AppletWrapper implements Serializable
-
-
Package org.jmol.awt
-
Class org.jmol.awt.AwtColor extends java.awt.Color implements Serializable
-
Serialized Fields
-
opacity
int opacity
-
-
-
-
Package org.jmol.console
-
Class org.jmol.console.ImageDialog extends javax.swing.JDialog implements Serializable
-
Serialized Fields
-
canvas
ImageDialog.ImageCanvas canvas
-
console
JmolAppConsoleInterface console
-
image
java.awt.Image image
-
imageMap
java.util.Map<java.lang.String,GenericImageDialog> imageMap
-
menubar
javax.swing.JMenuBar menubar
-
title
java.lang.String title
-
vwr
Viewer vwr
-
-
-
Class org.jmol.console.JmolButton extends javax.swing.JButton implements Serializable
-
Class org.jmol.console.JmolLabel extends javax.swing.JLabel implements Serializable
-
Class org.jmol.console.JmolToggleButton extends javax.swing.JToggleButton implements Serializable
-
Class org.jmol.console.KeyJCheckBox extends javax.swing.JCheckBox implements Serializable
-
Serialized Fields
-
key
java.lang.String key
-
-
-
Class org.jmol.console.KeyJCheckBoxMenuItem extends javax.swing.JCheckBoxMenuItem implements Serializable
-
Serialized Fields
-
key
java.lang.String key
-
-
-
Class org.jmol.console.KeyJMenu extends javax.swing.JMenu implements Serializable
-
Serialized Fields
-
key
java.lang.String key
-
-
-
Class org.jmol.console.KeyJMenuItem extends javax.swing.JMenuItem implements Serializable
-
Serialized Fields
-
key
java.lang.String key
-
-
-
Class org.jmol.console.KeyJRadioButtonMenuItem extends javax.swing.JRadioButtonMenuItem implements Serializable
-
Serialized Fields
-
key
java.lang.String key
-
-
-
Class org.jmol.console.ScriptEditor extends javax.swing.JDialog implements Serializable
-
Serialized Fields
-
attEcho
javax.swing.text.SimpleAttributeSet attEcho
-
attError
javax.swing.text.SimpleAttributeSet attError
-
attHighlight
javax.swing.text.SimpleAttributeSet attHighlight
-
buttonPanel
javax.swing.JPanel buttonPanel
-
checkButton
javax.swing.JButton checkButton
-
clearButton
javax.swing.JButton clearButton
-
closeButton
javax.swing.JButton closeButton
-
consoleButton
javax.swing.JButton consoleButton
-
editor
ScriptEditor.EditorTextPane editor
-
filename
java.lang.String filename
-
fontButton
javax.swing.JButton fontButton
-
fontSize
int fontSize
-
haltButton
javax.swing.JButton haltButton
-
jmolConsole
JmolConsole jmolConsole
-
loadButton
javax.swing.JButton loadButton
-
map
java.util.Map<java.lang.String,java.lang.Object> map
-
openButton
javax.swing.JButton openButton
-
parsedContext
ScriptContext parsedContext
-
parsedData
java.lang.String parsedData
-
pauseButton
javax.swing.JButton pauseButton
-
resumeButton
javax.swing.JButton resumeButton
-
runButton
javax.swing.JButton runButton
-
saveAsButton
javax.swing.JButton saveAsButton
-
saveButton
javax.swing.JButton saveButton
-
stateButton
javax.swing.JButton stateButton
-
stepButton
javax.swing.JButton stepButton
-
title
java.lang.String title
-
topButton
javax.swing.JButton topButton
-
vwr
Viewer vwr
-
zipFileName
java.lang.String zipFileName
-
-
-
-
Package org.jmol.dialog
-
Class org.jmol.dialog.Dialog extends javax.swing.JPanel implements Serializable
-
Serialized Fields
-
cb
javax.swing.JComboBox<java.lang.String> cb
-
choice
java.lang.String choice
-
dialogType
java.lang.String dialogType
-
extension
java.lang.String extension
-
extensions
java.lang.String[] extensions
-
imageChoices
java.lang.String[] imageChoices
-
imageExtensions
java.lang.String[] imageExtensions
-
imageType
java.lang.String imageType
-
initialFile
java.io.File initialFile
-
inputFileName
java.lang.String inputFileName
-
openPreview
FilePreview openPreview
-
outputFileName
java.lang.String outputFileName
-
qPanelJPEG
javax.swing.JPanel qPanelJPEG
-
qPanelPNG
javax.swing.JPanel qPanelPNG
-
qSliderJPEG
javax.swing.JSlider qSliderJPEG
-
qSliderPNG
javax.swing.JSlider qSliderPNG
-
qualityJ
int qualityJ
-
qualityP
int qualityP
-
vwr
Viewer vwr
-
-
-
Class org.jmol.dialog.FileChooser extends javax.swing.JFileChooser implements Serializable
-
Serialized Fields
-
dialog
javax.swing.JDialog dialog
-
dialogLocation
java.awt.Point dialogLocation
-
dialogSize
java.awt.Dimension dialogSize
-
-
-
Class org.jmol.dialog.FilePreview extends javax.swing.JPanel implements Serializable
-
Serialized Fields
-
active
javax.swing.JCheckBox active
-
append
javax.swing.JCheckBox append
-
cartoons
javax.swing.JCheckBox cartoons
-
chooser
javax.swing.JFileChooser chooser
-
display
FilePreview.FPPanel display
-
vwr
Viewer vwr
-
-
-
-
Package org.jmol.modelset
-
Class org.jmol.modelset.Atom extends Point3fi implements Serializable
-
Serialized Fields
-
altloc
char altloc
-
atomicAndIsotopeNumber
short atomicAndIsotopeNumber
-
atomID
byte atomID
-
atomSite
int atomSite
-
atomSymmetry
javajs.util.BS atomSymmetry
-
bonds
Bond[] bonds
MAY BE NULL -
clickabilityFlags
int clickabilityFlags
-
colixAtom
short colixAtom
-
formalChargeAndFlags
int formalChargeAndFlags
-
group
Group group
-
madAtom
short madAtom
-
nBackbonesDisplayed
int nBackbonesDisplayed
-
nBondsDisplayed
int nBondsDisplayed
-
paletteID
byte paletteID
-
shapeVisibilityFlags
int shapeVisibilityFlags
-
userDefinedVanDerWaalRadius
float userDefinedVanDerWaalRadius
-
valence
byte valence
-
-
-
-
Package org.jmol.script
-
Class org.jmol.script.ScriptException extends java.lang.Exception implements Serializable
-
Serialized Fields
-
eval
ScriptEval eval
-
isError
boolean isError
-
message
java.lang.String message
-
untranslated
java.lang.String untranslated
-
-
-
Class org.jmol.script.ScriptInterruption extends ScriptException implements Serializable
-
-
Package org.jmol.smiles
-
Class org.jmol.smiles.InvalidSmilesException extends java.lang.Exception implements Serializable
-
Class org.jmol.smiles.SmilesAtom extends javajs.util.P3 implements Serializable
-
Serialized Fields
-
aromaticAmbiguous
boolean aromaticAmbiguous
-
atomClass
float atomClass
-
atomicMass
int atomicMass
-
atomNumber
int atomNumber
-
atomSite
int atomSite
-
atomType
java.lang.String atomType
-
bioAtomName
java.lang.String bioAtomName
-
bioType
char bioType
-
bondCount
int bondCount
-
bonds
SmilesBond[] bonds
-
charge
int charge
-
cipChirality
int cipChirality
-
component
int component
-
connectivity
int connectivity
-
covalentHydrogenCount
int covalentHydrogenCount
-
degree
int degree
-
elementDefined
boolean elementDefined
-
elementNumber
int elementNumber
-
explicitHydrogenCount
int explicitHydrogenCount
-
hasSubpattern
boolean hasSubpattern
-
hasSymbol
boolean hasSymbol
-
implicitHydrogenCount
int implicitHydrogenCount
-
index
int index
-
iNested
int iNested
-
insCode
char insCode
-
isAND
boolean isAND
-
isAromatic
boolean isAromatic
-
isBioAtom
boolean isBioAtom
-
isBioAtomWild
boolean isBioAtomWild
-
isBioResidue
boolean isBioResidue
-
isFirst
boolean isFirst
true if this atom is the first SMILES atom or first after a . with no connector -
isLeadAtom
boolean isLeadAtom
-
isTopoAtom
boolean isTopoAtom
-
jmolIndex
int jmolIndex
-
mapIndex
int mapIndex
-
matchingComponent
int matchingComponent
-
matchingIndex
int matchingIndex
-
matchingNode
Node matchingNode
-
missingHydrogenCount
int missingHydrogenCount
-
nonhydrogenDegree
int nonhydrogenDegree
-
not
boolean not
-
notBondedIndex
int notBondedIndex
-
notCrossLinked
boolean notCrossLinked
-
nSubAtoms
int nSubAtoms
-
parent
SmilesAtom parent
-
pattern
java.lang.String pattern
-
patternIndex
int patternIndex
-
primitiveType
int primitiveType
-
referance
java.lang.String referance
-
residueChar
java.lang.String residueChar
-
residueName
java.lang.String residueName
-
residueNumber
int residueNumber
-
ringConnectivity
int ringConnectivity
-
ringMembership
int ringMembership
-
ringSize
int ringSize
-
selected
boolean selected
-
stereo
SmilesStereo stereo
-
subAtoms
SmilesAtom[] subAtoms
-
symbol
java.lang.String symbol
-
valence
int valence
-
-
-
-
Package org.jmol.util
-
Class org.jmol.util.ModulationSet extends Vibration implements Serializable
-
Serialized Fields
-
axesLengths
float[] axesLengths
unit cell axes -- used in Modulation for calculating magnetic modulations -
enabled
boolean enabled
indicates state of modulated or unmodulated -
fileOcc
double fileOcc
-
gammaE
javajs.util.M3 gammaE
-
gammaIinv
javajs.util.Matrix gammaIinv
-
htUij
java.util.Map<java.lang.String,java.lang.Float> htUij
current value of anisotropic parameter modulation -
id
java.lang.String id
an identifier for this modulation -
iop
int iop
the symmetry operation used to generate this atom -
isCommensurate
boolean isCommensurate
commensurate modulations cannot be "undone" and they cannot be turned off -
isQ
boolean isQ
-
isSubsystem
boolean isSubsystem
subsystems can deliver their own unique unit cell; they are commensurate -
modCalc
ModulationSet modCalc
modCalc is used for calculations independent of what the current setting is -
mods
javajs.util.Lst<Modulation> mods
the list of all modulations associated with this atom -
mxyz
javajs.util.V3 mxyz
the modulated magnetic spin -
nOps
int nOps
the number of operators in this space group -- needed for occupancy calculation -
occAbsolute
boolean occAbsolute
for Crenels (simple occupational modulation or Legendre displacement modulation, the value determined here is absolute (0 or 1), not an adjustment; set in calculate() by one of the modulations -
occParams
double[] occParams
-
occSiteMultiplicity
double occSiteMultiplicity
-
occValue
float occValue
final occupancy value -- absolute; in range [0,1] -
ptTemp
javajs.util.P3 ptTemp
-
qtOffset
javajs.util.P3 qtOffset
-
r0
javajs.util.P3 r0
the unmodulated original position of this atom; note that x,y,z extended from Vibration(V3) is the current displacement modulation itself -
rI
javajs.util.Matrix rI
-
rsvs
javajs.util.Matrix rsvs
the matrix representation for this atom's symmetry operation -
scale
float scale
an adjustable scaling factor, as for vibrations -
sigma
javajs.util.Matrix sigma
-
spinOp
float spinOp
the spin operation for this atom: +1/0/-1 -
strop
java.lang.String strop
a string description of the atom's symmetry operator -
symmetry
SymmetryInterface symmetry
the space group appropriate to this atom -
tau
javajs.util.Matrix tau
-
tFactorInv
javajs.util.Matrix tFactorInv
-
v0
javajs.util.V3 v0
-
vib
Vibration vib
vib is a spin vector when the model has modulation; otherwise an unmodulated vibration. -
vOcc
float vOcc
the current value of the occupancy modulation
-
-
-
Class org.jmol.util.Point3fi extends javajs.util.P3 implements Serializable
-
Serialized Fields
-
i
int i
index in full collection -
mi
short mi
model index -- may be to a trajectory -
sD
short sD
screen diameter -
sX
int sX
screen X -
sY
int sY
screen Y -
sZ
int sZ
screen Z
-
-
-
Class org.jmol.util.Vibration extends javajs.util.V3 implements Serializable
-
Serialized Fields
-
modDim
int modDim
modDim will be > 0 for modulation -
modScale
float modScale
-
showTrace
boolean showTrace
-
trace
javajs.util.P3[] trace
-
tracePt
int tracePt
-
-
-
-
Package org.jmol.viewer
-
Class org.jmol.viewer.JmolAsyncException extends java.io.IOException implements Serializable
-
Serialized Fields
-
fileName
java.lang.String fileName
-
-
-
-
Package org.openscience.jmol.app
-
Class org.openscience.jmol.app.Jmol extends JmolPanel implements Serializable
-
-
Package org.openscience.jmol.app.janocchio
-
Class org.openscience.jmol.app.janocchio.CoupleColourSelectionPanel extends javax.swing.JPanel implements Serializable
-
Serialized Fields
-
coupleTable
CoupleTable coupleTable
-
jLabel1
javax.swing.JLabel jLabel1
-
jLabel2
javax.swing.JLabel jLabel2
-
redField
javax.swing.JTextField redField
-
redLabel
javax.swing.JLabel redLabel
-
setAllButton
javax.swing.JButton setAllButton
-
yellowField
javax.swing.JTextField yellowField
-
yellowLabel
javax.swing.JLabel yellowLabel
-
-
-
Class org.openscience.jmol.app.janocchio.CoupleParameterSelectionPanel extends javax.swing.JPanel implements Serializable
-
Serialized Fields
-
chButtonGroup
javax.swing.ButtonGroup chButtonGroup
-
coupleTable
CoupleTable coupleTable
-
eq0RadioButton
javax.swing.JRadioButton eq0RadioButton
-
eq1RadioButton
javax.swing.JRadioButton eq1RadioButton
-
eq2RadioButton
javax.swing.JRadioButton eq2RadioButton
-
eq3RadioButton
javax.swing.JRadioButton eq3RadioButton
-
jLabel1
javax.swing.JLabel jLabel1
-
jLabel2
javax.swing.JLabel jLabel2
-
jLabel3
javax.swing.JLabel jLabel3
-
jLabel4
javax.swing.JLabel jLabel4
-
titleLabel
javax.swing.JLabel titleLabel
-
-
-
Class org.openscience.jmol.app.janocchio.CoupleTable extends javax.swing.JTabbedPane implements Serializable
-
Serialized Fields
-
calcProps
NmrMolecule calcProps
-
CHequation
java.lang.String CHequation
-
colorCellRenderer
NMRTableCellRenderer colorCellRenderer
-
coupleAddAllButton
javax.swing.JButton coupleAddAllButton
-
coupleColourSelectionPanel
CoupleColourSelectionPanel coupleColourSelectionPanel
-
coupledeleteAllButton
javax.swing.JButton coupledeleteAllButton
-
coupledeleteButton
javax.swing.JButton coupledeleteButton
-
coupleSelection
javax.swing.ListSelectionModel coupleSelection
-
coupleTable
javax.swing.JTable coupleTable
-
coupleTableModel
CoupleTable.CoupleTableModel coupleTableModel
-
degtorad
double degtorad
-
expCouples
java.lang.String[][] expCouples
-
frameDeltaDisplay
FrameDeltaDisplay frameDeltaDisplay
-
labelArray
java.lang.String[] labelArray
-
molCDKuptodate
boolean molCDKuptodate
-
natomsPerModel
int natomsPerModel
-
nmrPanel
NMR_JmolPanel nmrPanel
-
redValue
double redValue
-
selectedCoupleRow
int[] selectedCoupleRow
-
viewer
NMR_Viewer viewer
-
yellowValue
double yellowValue
-
-
-
Class org.openscience.jmol.app.janocchio.FrameCounter extends javax.swing.JPanel implements Serializable
-
Serialized Fields
-
field
javax.swing.JTextField field
-
frameCount
int frameCount
-
frameNumber
int frameNumber
-
label
javax.swing.JLabel label
-
viewer
NMR_Viewer viewer
-
-
-
Class org.openscience.jmol.app.janocchio.FrameDeltaDisplay extends javax.swing.JPanel implements Serializable
-
Serialized Fields
-
coupleWeight
double coupleWeight
-
coupleWeightField
javax.swing.JTextField coupleWeightField
-
frameDeltaCouple
double frameDeltaCouple
-
frameDeltaNoe
double frameDeltaNoe
-
label
javax.swing.JLabel label
-
noeWeight
double noeWeight
-
noeWeightField
javax.swing.JTextField noeWeightField
-
totalfield
javax.swing.JTextField totalfield
-
viewer
NMR_Viewer viewer
-
-
-
Class org.openscience.jmol.app.janocchio.LabelSetter extends javax.swing.JPanel implements Serializable
-
Serialized Fields
-
coupleTable
CoupleTable coupleTable
-
field
javax.swing.JTextField field
-
label
javax.swing.JLabel label
-
labelArray
java.lang.String[] labelArray
-
minindex
int minindex
-
noeTable
NoeTable noeTable
-
selectedAtomIndex
int selectedAtomIndex
-
viewer
NMR_Viewer viewer
-
-
-
Class org.openscience.jmol.app.janocchio.NamfisReader extends javax.swing.JPanel implements Serializable
-
Class org.openscience.jmol.app.janocchio.NamfisSaver extends javax.swing.JPanel implements Serializable
-
Class org.openscience.jmol.app.janocchio.NMR_DisplayPanel extends DisplayPanel implements Serializable
-
Serialized Fields
-
frameDeltaDisplay
FrameDeltaDisplay frameDeltaDisplay
-
guimap
NmrGuiMap guimap
-
populationDisplay
PopulationDisplay populationDisplay
-
status
StatusBar status
-
viewer
NMR_Viewer viewer
-
-
-
Class org.openscience.jmol.app.janocchio.NMR_JmolPanel extends JmolPanel implements Serializable
-
Serialized Fields
-
coupleTable
CoupleTable coupleTable
-
exportChooser
javax.swing.JFileChooser exportChooser
-
frameCounter
FrameCounter frameCounter
-
frameDeltaDisplay
FrameDeltaDisplay frameDeltaDisplay
-
htMessageCallbacks
java.util.Map<java.lang.String,java.lang.Thread> htMessageCallbacks
-
isApplet
boolean isApplet
-
labelSetter
LabelSetter labelSetter
-
mainSplitPane
javax.swing.JSplitPane mainSplitPane
-
nmrApplet
NmrApplet nmrApplet
-
nmrDisplay
NMR_DisplayPanel nmrDisplay
-
nmrguimap
NmrGuiMap nmrguimap
-
noeTable
NoeTable noeTable
-
openChooser
FileChooser openChooser
-
populationDisplay
PopulationDisplay populationDisplay
-
readNamfisChooser
javax.swing.JFileChooser readNamfisChooser
-
readNmrChooser
javax.swing.JFileChooser readNmrChooser
-
saveNamfisChooser
javax.swing.JFileChooser saveNamfisChooser
-
saveNmrChooser
javax.swing.JFileChooser saveNmrChooser
-
-
-
Class org.openscience.jmol.app.janocchio.NMR_JmolPanel.DetachAppletAction extends javax.swing.AbstractAction implements Serializable
-
Class org.openscience.jmol.app.janocchio.NMR_JmolPanel.JumpBestFrameAction extends javax.swing.AbstractAction implements Serializable
-
Class org.openscience.jmol.app.janocchio.NMR_JmolPanel.LabelNmrAction extends javax.swing.AbstractAction implements Serializable
-
Class org.openscience.jmol.app.janocchio.NMR_JmolPanel.ReadNamfisAction extends javax.swing.AbstractAction implements Serializable
-
Class org.openscience.jmol.app.janocchio.NMR_JmolPanel.ReadNmrAction extends javax.swing.AbstractAction implements Serializable
-
Class org.openscience.jmol.app.janocchio.NMR_JmolPanel.ReattachAppletAction extends javax.swing.AbstractAction implements Serializable
-
Class org.openscience.jmol.app.janocchio.NMR_JmolPanel.ViewCoupleTableAction extends NMR_JmolPanel.MoleculeDependentAction implements Serializable
-
Class org.openscience.jmol.app.janocchio.NMR_JmolPanel.ViewNoeTableAction extends NMR_JmolPanel.MoleculeDependentAction implements Serializable
-
Class org.openscience.jmol.app.janocchio.NMR_JmolPanel.WriteNamfisAction extends javax.swing.AbstractAction implements Serializable
-
Class org.openscience.jmol.app.janocchio.NmrReader extends javax.swing.JPanel implements Serializable
-
Class org.openscience.jmol.app.janocchio.NmrSaver extends javax.swing.JPanel implements Serializable
-
Class org.openscience.jmol.app.janocchio.NoeColourSelectionPanel extends javax.swing.JPanel implements Serializable
-
Serialized Fields
-
jLabel1
javax.swing.JLabel jLabel1
-
jLabel2
javax.swing.JLabel jLabel2
-
jLabel3
javax.swing.JLabel jLabel3
-
jLabel4
javax.swing.JLabel jLabel4
-
jLabel5
javax.swing.JLabel jLabel5
-
noeTable
NoeTable noeTable
-
redField
javax.swing.JTextField redField
-
redLabel
javax.swing.JLabel redLabel
-
setAllButton
javax.swing.JButton setAllButton
-
yellowField
javax.swing.JTextField yellowField
-
yellowLabel
javax.swing.JLabel yellowLabel
-
-
-
Class org.openscience.jmol.app.janocchio.NoeParameterSelectionPanel extends javax.swing.JPanel implements Serializable
-
Serialized Fields
-
cutoffField
javax.swing.JTextField cutoffField
-
cutoffLabel
javax.swing.JLabel cutoffLabel
-
freqField
javax.swing.JTextField freqField
-
freqLabel
javax.swing.JLabel freqLabel
-
noesyComboBox
javax.swing.JComboBox<java.lang.String> noesyComboBox
-
noesyLabel
javax.swing.JLabel noesyLabel
-
noeTable
NoeTable noeTable
-
refSingleComboBox
javax.swing.JComboBox<java.lang.String> refSingleComboBox
-
refSingleLabel
javax.swing.JLabel refSingleLabel
-
rhoStarField
javax.swing.JTextField rhoStarField
-
rhoStarLabel
javax.swing.JLabel rhoStarLabel
-
setAllButton
javax.swing.JButton setAllButton
-
tauField
javax.swing.JTextField tauField
-
tauLabel
javax.swing.JLabel tauLabel
-
titleLabel
javax.swing.JLabel titleLabel
-
tMixField
javax.swing.JTextField tMixField
-
tMixLabel
javax.swing.JLabel tMixLabel
-
-
-
Class org.openscience.jmol.app.janocchio.NoeTable extends javax.swing.JTabbedPane implements Serializable
-
Serialized Fields
-
calcProps
NmrMolecule calcProps
-
colorCellRenderer
NMRTableCellRenderer colorCellRenderer
-
cutoff
double cutoff
-
expDists
java.lang.String[][] expDists
-
expNoes
java.lang.String[][] expNoes
-
expOrDistButton
javax.swing.JComboBox<java.lang.String> expOrDistButton
-
frameDeltaDisplay
FrameDeltaDisplay frameDeltaDisplay
-
freq
double freq
-
labelArray
java.lang.String[] labelArray
-
lexpNoes
boolean lexpNoes
-
lrefSingle
boolean lrefSingle
-
molCDKuptodate
boolean molCDKuptodate
-
natomsPerModel
int natomsPerModel
-
nmrPanel
NMR_JmolPanel nmrPanel
-
noeColourSelectionPanel
NoeColourSelectionPanel noeColourSelectionPanel
-
noedeleteAllButton
javax.swing.JButton noedeleteAllButton
-
noedeleteButton
javax.swing.JButton noedeleteButton
-
noeExprefValue
double noeExprefValue
-
noeNPrefIndices
int[] noeNPrefIndices
-
noeNPrefValue
double noeNPrefValue
-
noeParameterSelectionPanel
NoeParameterSelectionPanel noeParameterSelectionPanel
-
noeSelection
javax.swing.ListSelectionModel noeSelection
-
noesetRefButton
javax.swing.JButton noesetRefButton
-
noesy
boolean noesy
-
noeTable
javax.swing.JTable noeTable
-
noeTableModel
NoeTable.NoeTableModel noeTableModel
-
redValue
double redValue
-
rhoStar
double rhoStar
-
selectedNoeRow
int[] selectedNoeRow
-
tau
double tau
-
tMix
double tMix
-
viewer
NMR_Viewer viewer
-
yellowValue
double yellowValue
-
-
-
Class org.openscience.jmol.app.janocchio.PopulationDisplay extends javax.swing.JPanel implements Serializable
-
Serialized Fields
-
field
javax.swing.JTextField field
-
frameNumber
int frameNumber
-
imaxp
int imaxp
-
label
javax.swing.JLabel label
-
maxp
double maxp
-
population
double[] population
-
populationFrames
javax.swing.JCheckBox populationFrames
-
storedFrameNumber
int storedFrameNumber
-
viewer
NMR_Viewer viewer
-
-
-
Class org.openscience.jmol.app.janocchio.TableSorter extends javax.swing.table.AbstractTableModel implements Serializable
-
Serialized Fields
-
columnComparators
java.util.Map columnComparators
-
modelToView
int[] modelToView
-
mouseListener
java.awt.event.MouseListener mouseListener
-
sortingColumns
java.util.List sortingColumns
-
tableHeader
javax.swing.table.JTableHeader tableHeader
-
tableModel
javax.swing.table.TableModel tableModel
-
tableModelListener
javax.swing.event.TableModelListener tableModelListener
-
viewToModel
TableSorter.Row[] viewToModel
-
-
-
-
Package org.openscience.jmol.app.jmolpanel
-
Class org.openscience.jmol.app.jmolpanel.AboutDialog extends javax.swing.JDialog implements Serializable
-
Serialized Fields
-
vwr
JmolViewer vwr
-
-
-
Class org.openscience.jmol.app.jmolpanel.AtomSetChooser extends javax.swing.JFrame implements Serializable
-
Serialized Fields
-
amplitudeSlider
javax.swing.JSlider amplitudeSlider
-
animThread
java.lang.Thread animThread
-
currentIndex
int currentIndex
-
fpsSlider
javax.swing.JSlider fpsSlider
-
indexes
int[] indexes
Sequence of atom set indexes in current tree selection for a branch, or siblings for a leaf. -
infoLabel
javax.swing.JLabel infoLabel
-
periodSlider
javax.swing.JSlider periodSlider
-
propertiesTextArea
javax.swing.JTextArea propertiesTextArea
-
radiusSlider
javax.swing.JSlider radiusSlider
-
radiusValue
int radiusValue
-
repeatCheckBox
javax.swing.JCheckBox repeatCheckBox
-
saveChooser
javax.swing.JFileChooser saveChooser
-
scaleSlider
javax.swing.JSlider scaleSlider
-
selectSlider
javax.swing.JSlider selectSlider
-
tree
javax.swing.JTree tree
-
treeModel
javax.swing.tree.DefaultTreeModel treeModel
-
vwr
Viewer vwr
-
-
-
Class org.openscience.jmol.app.jmolpanel.CreditsDialog extends HelpDialog implements Serializable
-
Class org.openscience.jmol.app.jmolpanel.DisplayPanel extends javax.swing.JPanel implements Serializable
-
Serialized Fields
-
axesAction
javax.swing.Action axesAction
-
bottomAction
javax.swing.Action bottomAction
-
boundboxAction
javax.swing.Action boundboxAction
-
buttonModelkit
javax.swing.AbstractButton buttonModelkit
-
buttonRotate
javax.swing.AbstractButton buttonRotate
-
defineCenterAction
DisplayPanel.DefineCenterAction defineCenterAction
-
deleteAction
javax.swing.Action deleteAction
-
dimSize
java.awt.Dimension dimSize
-
displaySpeed
java.lang.String displaySpeed
-
frame
javax.swing.JFrame frame
-
frontAction
javax.swing.Action frontAction
-
haveDisplay
boolean haveDisplay
-
homeAction
DisplayPanel.HomeAction homeAction
-
hydrogensAction
javax.swing.Action hydrogensAction
-
jmolPanel
JmolPanel jmolPanel
-
lastMotionEventNumber
int lastMotionEventNumber
-
leftAction
javax.swing.Action leftAction
-
measurementsAction
javax.swing.Action measurementsAction
-
perspectiveAction
javax.swing.Action perspectiveAction
-
rectClip
java.awt.Rectangle rectClip
-
rightAction
javax.swing.Action rightAction
-
showPaintTime
boolean showPaintTime
-
startupDim
java.awt.Dimension startupDim
-
timeBegin
long timeBegin
-
toolbarButtonGroup
javax.swing.ButtonGroup toolbarButtonGroup
-
topAction
javax.swing.Action topAction
-
vwr
Viewer vwr
-
xlateAction
javax.swing.Action xlateAction
-
zoomAction
javax.swing.Action zoomAction
-
-
-
Class org.openscience.jmol.app.jmolpanel.DisplayPanel.CheckBoxMenuItemAction extends javax.swing.AbstractAction implements Serializable
-
Serialized Fields
-
action
java.lang.String action
-
-
-
Class org.openscience.jmol.app.jmolpanel.DisplayPanel.MoveToAction extends javax.swing.AbstractAction implements Serializable
-
Serialized Fields
-
action
java.lang.String action
-
-
-
Class org.openscience.jmol.app.jmolpanel.DisplayPanel.SetStatusAction extends javax.swing.AbstractAction implements Serializable
-
Serialized Fields
-
statusText
java.lang.String statusText
-
-
-
Class org.openscience.jmol.app.jmolpanel.GaussianDialog extends javax.swing.JDialog implements Serializable
-
Serialized Fields
-
basisBox
javax.swing.JComboBox<java.lang.String> basisBox
-
charge
java.lang.String charge
-
chargeSpinner
javax.swing.JSpinner chargeSpinner
-
check
java.lang.String check
-
checkField
javax.swing.JTextField checkField
-
closeButton
javax.swing.JButton closeButton
-
container
javax.swing.JPanel container
-
dfBox
javax.swing.JComboBox<java.lang.String> dfBox
-
editArea
javax.swing.JTextPane editArea
-
editPane
javax.swing.JScrollPane editPane
-
file
java.lang.String file
-
fileButton
javax.swing.JButton fileButton
-
fileChooser
javax.swing.JFileChooser fileChooser
-
fileField
javax.swing.JTextField fileField
-
iscroll
int iscroll
-
mem
java.lang.String mem
-
memBox
javax.swing.JComboBox<java.lang.String> memBox
-
meth
java.lang.String meth
-
methBox
javax.swing.JComboBox<java.lang.String> methBox
-
mult
java.lang.String mult
-
multSpinner
javax.swing.JSpinner multSpinner
-
optsField
javax.swing.JTextField optsField
-
proc
java.lang.String proc
-
procSpinner
javax.swing.JSpinner procSpinner
-
refreshButton
javax.swing.JButton refreshButton
-
route
java.lang.String route
-
saveButton
javax.swing.JButton saveButton
-
select
java.lang.String select
-
selectField
javax.swing.JTextField selectField
-
vwr
Viewer vwr
-
-
-
Class org.openscience.jmol.app.jmolpanel.HelpDialog extends javax.swing.JDialog implements Serializable
-
Serialized Fields
-
html
javax.swing.JEditorPane html
-
-
-
Class org.openscience.jmol.app.jmolpanel.JmolPanel extends javax.swing.JPanel implements Serializable
-
Serialized Fields
-
appletContext
java.lang.String appletContext
-
atomSetChooser
AtomSetChooser atomSetChooser
-
commands
java.util.Map<java.lang.String,javax.swing.Action> commands
-
consoleframe
javax.swing.JFrame consoleframe
-
copyImageAction
JmolPanel.CopyImageAction copyImageAction
-
copyScriptAction
JmolPanel.CopyScriptAction copyScriptAction
-
display
DisplayPanel display
-
executeScriptAction
JmolPanel.ExecuteScriptAction executeScriptAction
-
exportAction
JmolPanel.ExportAction exportAction
-
frame
javax.swing.JFrame frame
-
gaussianDialog
GaussianDialog gaussianDialog
-
guimap
GuiMap guimap
-
imageType
java.lang.String imageType
-
isPlugin
boolean isPlugin
-
jmolApp
JmolApp jmolApp
-
measurementTable
MeasurementTable measurementTable
-
menuItems
java.util.Map<java.lang.String,javax.swing.JMenuItem> menuItems
-
modelAdapter
JmolAdapter modelAdapter
-
myStatusListener
StatusListener myStatusListener
-
pasteClipboardAction
JmolPanel.PasteClipboardAction pasteClipboardAction
-
pcs
java.beans.PropertyChangeSupport pcs
-
pluginMenu
javax.swing.JMenu pluginMenu
-
plugins
java.util.Map<java.lang.String,JmolPlugin> plugins
-
povrayAction
JmolPanel.PovrayAction povrayAction
-
preferencesDialog
PreferencesDialog preferencesDialog
-
printAction
JmolPanel.PrintAction printAction
-
qualityJPG
int qualityJPG
-
qualityPNG
int qualityPNG
-
recentFiles
RecentFilesDialog recentFiles
-
serverService
JsonNioServer serverService
-
service
JsonNioServer service
-
splash
SplashInterface splash
-
startupHeight
int startupHeight
-
startupWidth
int startupWidth
-
status
StatusBar status
-
surfaceTool
SurfaceTool surfaceTool
-
surfaceToolAction
JmolPanel.SurfaceToolAction surfaceToolAction
-
toolbar
javax.swing.JToolBar toolbar
-
toWebAction
JmolPanel.ToWebAction toWebAction
-
viewMeasurementTableAction
JmolPanel.ViewMeasurementTableAction viewMeasurementTableAction
-
vwr
Viewer vwr
-
vwrOptions
java.util.Map<java.lang.String,java.lang.Object> vwrOptions
-
webExport
WebExport webExport
-
windowName
java.lang.String windowName
-
writeAction
JmolPanel.WriteAction writeAction
-
-
-
Class org.openscience.jmol.app.jmolpanel.JmolPanel.AboutAction extends javax.swing.AbstractAction implements Serializable
-
Class org.openscience.jmol.app.jmolpanel.JmolPanel.AnimButton extends JmolButton implements Serializable
-
Serialized Fields
-
lastPressTime
long lastPressTime
-
script
java.lang.String script
-
-
-
Class org.openscience.jmol.app.jmolpanel.JmolPanel.AtomSetChooserAction extends javax.swing.AbstractAction implements Serializable
-
Class org.openscience.jmol.app.jmolpanel.JmolPanel.CloseAction extends javax.swing.AbstractAction implements Serializable
-
Class org.openscience.jmol.app.jmolpanel.JmolPanel.ConsoleAction extends javax.swing.AbstractAction implements Serializable
-
Class org.openscience.jmol.app.jmolpanel.JmolPanel.CopyImageAction extends javax.swing.AbstractAction implements Serializable
-
Class org.openscience.jmol.app.jmolpanel.JmolPanel.CopyScriptAction extends javax.swing.AbstractAction implements Serializable
-
Class org.openscience.jmol.app.jmolpanel.JmolPanel.CreditsAction extends javax.swing.AbstractAction implements Serializable
-
Class org.openscience.jmol.app.jmolpanel.JmolPanel.ExecuteScriptAction extends javax.swing.AbstractAction implements Serializable
-
Class org.openscience.jmol.app.jmolpanel.JmolPanel.ExitAction extends javax.swing.AbstractAction implements Serializable
-
Class org.openscience.jmol.app.jmolpanel.JmolPanel.ExportAction extends javax.swing.AbstractAction implements Serializable
-
Class org.openscience.jmol.app.jmolpanel.JmolPanel.GaussianAction extends javax.swing.AbstractAction implements Serializable
-
Class org.openscience.jmol.app.jmolpanel.JmolPanel.NewAction extends javax.swing.AbstractAction implements Serializable
-
Serialized Fields
-
script
java.lang.String script
-
-
-
Class org.openscience.jmol.app.jmolpanel.JmolPanel.NewwinAction extends javax.swing.AbstractAction implements Serializable
-
Class org.openscience.jmol.app.jmolpanel.JmolPanel.OpenAction extends JmolPanel.NewAction implements Serializable
-
Class org.openscience.jmol.app.jmolpanel.JmolPanel.OpenMolAction extends JmolPanel.NewAction implements Serializable
-
Class org.openscience.jmol.app.jmolpanel.JmolPanel.OpenPdbAction extends JmolPanel.NewAction implements Serializable
-
Class org.openscience.jmol.app.jmolpanel.JmolPanel.OpenUrlAction extends JmolPanel.NewAction implements Serializable
-
Serialized Fields
-
prompt
java.lang.String prompt
-
title
java.lang.String title
-
-
-
Class org.openscience.jmol.app.jmolpanel.JmolPanel.PasteClipboardAction extends javax.swing.AbstractAction implements Serializable
-
Class org.openscience.jmol.app.jmolpanel.JmolPanel.PovrayAction extends javax.swing.AbstractAction implements Serializable
-
Class org.openscience.jmol.app.jmolpanel.JmolPanel.PrintAction extends javax.swing.AbstractAction implements Serializable
-
Class org.openscience.jmol.app.jmolpanel.JmolPanel.RecentFilesAction extends javax.swing.AbstractAction implements Serializable
-
Class org.openscience.jmol.app.jmolpanel.JmolPanel.ResizeAction extends javax.swing.AbstractAction implements Serializable
-
Class org.openscience.jmol.app.jmolpanel.JmolPanel.ScriptEditorAction extends javax.swing.AbstractAction implements Serializable
-
Class org.openscience.jmol.app.jmolpanel.JmolPanel.ScriptWindowAction extends javax.swing.AbstractAction implements Serializable
-
Class org.openscience.jmol.app.jmolpanel.JmolPanel.SurfaceToolAction extends javax.swing.AbstractAction implements Serializable
-
Class org.openscience.jmol.app.jmolpanel.JmolPanel.ToWebAction extends javax.swing.AbstractAction implements Serializable
-
Class org.openscience.jmol.app.jmolpanel.JmolPanel.UguideAction extends javax.swing.AbstractAction implements Serializable
-
Class org.openscience.jmol.app.jmolpanel.JmolPanel.ViewMeasurementTableAction extends javax.swing.AbstractAction implements Serializable
-
Class org.openscience.jmol.app.jmolpanel.JmolPanel.WhatsNewAction extends javax.swing.AbstractAction implements Serializable
-
Class org.openscience.jmol.app.jmolpanel.JmolPanel.WriteAction extends javax.swing.AbstractAction implements Serializable
-
Class org.openscience.jmol.app.jmolpanel.MeasurementTable extends javax.swing.JDialog implements Serializable
-
Serialized Fields
-
deleteAllButton
javax.swing.JButton deleteAllButton
-
deleteButton
javax.swing.JButton deleteButton
-
measurementTable
javax.swing.JTable measurementTable
-
measurementTableModel
MeasurementTable.MeasurementTableModel measurementTableModel
-
selectedMeasurementRow
int selectedMeasurementRow
-
stringClass
java.lang.Class<? extends java.lang.String> stringClass
-
vwr
Viewer vwr
-
-
-
Class org.openscience.jmol.app.jmolpanel.PovrayDialog extends javax.swing.JDialog implements Serializable
-
Serialized Fields
-
allFramesCheck
javax.swing.JCheckBox allFramesCheck
-
antiAliasCheck
javax.swing.JCheckBox antiAliasCheck
-
displayWhileRenderingCheck
javax.swing.JCheckBox displayWhileRenderingCheck
-
goButton
javax.swing.JButton goButton
-
imageSizeHeight
javax.swing.JLabel imageSizeHeight
-
imageSizeRatioBox
javax.swing.JCheckBox imageSizeRatioBox
-
imageSizeRatioCombo
javax.swing.JComboBox<java.lang.String> imageSizeRatioCombo
-
imageSizeTextHeight
javax.swing.JFormattedTextField imageSizeTextHeight
-
imageSizeTextWidth
javax.swing.JFormattedTextField imageSizeTextWidth
-
imageSizeWidth
javax.swing.JLabel imageSizeWidth
-
mosaicPreviewCheck
javax.swing.JCheckBox mosaicPreviewCheck
-
mosaicPreviewComboEnd
javax.swing.JComboBox<java.lang.String> mosaicPreviewComboEnd
-
mosaicPreviewComboStart
javax.swing.JComboBox<java.lang.String> mosaicPreviewComboStart
-
mosaicPreviewEnd
javax.swing.JLabel mosaicPreviewEnd
-
mosaicPreviewStart
javax.swing.JLabel mosaicPreviewStart
-
outputAlphaCheck
javax.swing.JCheckBox outputAlphaCheck
-
outputExtension
java.lang.String outputExtension
-
outputFileType
java.lang.String outputFileType
-
outputFormatCheck
javax.swing.JCheckBox outputFormatCheck
-
outputFormatCombo
javax.swing.JComboBox<java.lang.String> outputFormatCombo
-
outputHeight
int outputHeight
-
outputWidth
int outputWidth
-
povrayPathButton
javax.swing.JButton povrayPathButton
-
povrayPathLabel
javax.swing.JTextField povrayPathLabel
-
runPovCheck
javax.swing.JCheckBox runPovCheck
-
saveField
javax.swing.JTextField saveField
-
savePathLabel
javax.swing.JTextField savePathLabel
-
-
-
Class org.openscience.jmol.app.jmolpanel.PreferencesDialog extends javax.swing.JDialog implements Serializable
-
Serialized Fields
-
abNo
javax.swing.JRadioButton abNo
-
abYes
javax.swing.JRadioButton abYes
-
actions
java.util.List<javax.swing.Action> actions
-
applyButton
javax.swing.JButton applyButton
-
autoBond
boolean autoBond
-
axesOrientationRasmol
boolean axesOrientationRasmol
-
bButton
javax.swing.JButton bButton
-
bdSlider
javax.swing.JSlider bdSlider
-
bondingVersion
int bondingVersion
-
bondTolerance
float bondTolerance
-
btSlider
javax.swing.JSlider btSlider
-
bwSlider
javax.swing.JSlider bwSlider
-
cancelButton
javax.swing.JButton cancelButton
-
cbAxesOrientationRasmol
javax.swing.JCheckBox cbAxesOrientationRasmol
-
cbClearHistory
javax.swing.JCheckBox cbClearHistory
-
cbOpenFilePreview
javax.swing.JCheckBox cbOpenFilePreview
-
cbPerspectiveDepth
javax.swing.JCheckBox cbPerspectiveDepth
-
cbShowAxes
javax.swing.JCheckBox cbShowAxes
-
cbShowBoundingBox
javax.swing.JCheckBox cbShowBoundingBox
-
cH
javax.swing.JCheckBox cH
-
checkBoxListener
java.awt.event.ItemListener checkBoxListener
-
clearHistory
boolean clearHistory
-
cM
javax.swing.JCheckBox cM
-
commands
java.util.Map<java.lang.String,javax.swing.Action> commands
-
currentProperties
java.util.Properties currentProperties
-
eButton
javax.swing.JButton eButton
-
fontScale
int fontScale
-
guimap
GuiMap guimap
-
jmol
JmolPanel jmol
-
jmolDefaultProperties
java.util.Properties jmolDefaultProperties
-
jmolDefaultsButton
javax.swing.JButton jmolDefaultsButton
-
marBond
short marBond
-
minBondDistance
float minBondDistance
-
okButton
javax.swing.JButton okButton
-
openFilePreview
boolean openFilePreview
-
originalSystemProperties
java.util.Properties originalSystemProperties
-
pButton
javax.swing.JButton pButton
-
percentVdwAtom
int percentVdwAtom
-
perspectiveDepth
boolean perspectiveDepth
-
prefsAction
PreferencesDialog.PrefsAction prefsAction
-
rasmolDefaultsButton
javax.swing.JButton rasmolDefaultsButton
-
showAxes
boolean showAxes
-
showBoundingBox
boolean showBoundingBox
-
showHydrogens
boolean showHydrogens
-
showMeasurements
boolean showMeasurements
-
tButton
javax.swing.JButton tButton
-
vButton
javax.swing.JButton vButton
-
vdwPercentSlider
javax.swing.JSlider vdwPercentSlider
-
vwr
Viewer vwr
-
-
-
Class org.openscience.jmol.app.jmolpanel.Splash extends java.awt.Window implements Serializable
-
Serialized Fields
-
imgHeight
int imgHeight
-
imgWidth
int imgWidth
-
splashImage
java.awt.Image splashImage
-
status
java.lang.String status
-
statusTop
int statusTop
-
textY
int textY
-
-
-
Class org.openscience.jmol.app.jmolpanel.StatusBar extends javax.swing.JPanel implements Serializable
-
Serialized Fields
-
status
javax.swing.JLabel[] status
-
-
-
Class org.openscience.jmol.app.jmolpanel.WhatsNewDialog extends HelpDialog implements Serializable
-
-
Package org.openscience.jmol.app.jmolpanel.console
-
Class org.openscience.jmol.app.jmolpanel.console.ConsoleTextArea extends javax.swing.JTextArea implements Serializable
-
-
Package org.openscience.jmol.app.jsonkiosk
-
Class org.openscience.jmol.app.jsonkiosk.BannerFrame extends javax.swing.JFrame implements Serializable
-
Serialized Fields
-
bannerLabel
javax.swing.JLabel bannerLabel
-
-
-
Class org.openscience.jmol.app.jsonkiosk.KioskFrame extends javax.swing.JFrame implements Serializable
-
-
Package org.openscience.jmol.app.webexport
-
Class org.openscience.jmol.app.webexport.Orbitals extends javax.swing.JPanel implements Serializable
-
Class org.openscience.jmol.app.webexport.Test extends javax.swing.JPanel implements Serializable
- serialVersionUID:
- 1L
-
Serialized Fields
-
appletPath
javax.swing.JTextField appletPath
-
arrayListHandler
ArrayListTransferHandler arrayListHandler
-
fc
javax.swing.JFileChooser fc
-
FileButton
javax.swing.JButton FileButton
-
movetoTime
javax.swing.JButton movetoTime
-
PathButton
javax.swing.JButton PathButton
-
StateButton
javax.swing.JButton StateButton
-
StringtoScriptButton
javax.swing.JButton StringtoScriptButton
-
vwr
Viewer vwr
-
-
Class org.openscience.jmol.app.webexport.WebExport extends javax.swing.JPanel implements Serializable
-